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Accelerate meningitis

Source: R/accelerate_hep.R
accelerate_meningitis.Rd

accelerate_meningitis_campaign() accelerate meningitis_campaign by adding planned meningitis campaigns to the provided values in df. When a value is reported for a year and country, then this value is kept, even after 2018. Some planned values are provided only for the denominator. For some planned campaigns only the denominator is provided. When this is the case, the numerator is calculated by taking the best historical vaccination coverage achieved, or if not available by taking the best historical coverage across all countries.

Usage

accelerate_meningitis_campaign(
  df,
  ind_ids = billion_ind_codes("hep"),
  scenario_col = "scenario",
  value_col = "value",
  start_year = 2018,
  end_year = 2025,
  years_best_performance = 2015:2018,
  default_scenario = "default",
  scenario_name = "scenario_name",
  ...
)

accelerate_meningitis_routine(
  df,
  ind_ids = billion_ind_codes("hep"),
  value_col = "value",
  scenario_col = "scenario",
  start_year = 2018,
  default_scenario = "default",
  scenario_name = "acceleration",
  ...
)

Arguments

df

Data frame in long format, where 1 row corresponds to a specific country, year, and indicator.

ind_ids

Named vector of indicator codes for input indicators to the Billion. Although separate indicator codes can be used than the standard, they must be supplied as a named vector where the names correspond to the output of billion_ind_codes().

scenario_col

Column name of column with scenario identifiers. Useful for calculating contributions on data in long format rather than wide format.

value_col

Column name of column with indicator values.

start_year

Base year for contribution calculation, defaults to 2018.

end_year

End year(s) for contribution calculation, defaults to 2019 to 2025.

years_best_performance

vector of years with the years in which the best performance should be found.

default_scenario

name of the default scenario.

scenario_name

name of scenario

...

additional parameters to be passed to scenario function

Value

data frame with acceleration scenario binded to df. scenario_col is set to acceleration

Details

Planned campaigns are the planned campaigns targets provided by WHO technical programs based on member states planification.

accelerate_meningitis_routine() accelerate routine vaccination by aiming at a 90% 2030, only when value is >= 0 (removes cases where value is absent).

Runs:

  • scenario_fixed_target_col(df, target_col = "target, target_year = 2025, small_is_best = FALSE, upper_limit = 99)

See also

HEP acceleration scenarios accelerate_cholera_campaign(), accelerate_detect(), accelerate_espar(), accelerate_measles_routine(), accelerate_polio_routine(), accelerate_yellow_fever_campaign()